NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000043

Scaffold Ga0193726_1000043


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000043 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)275142
Total Scaffold Genes246 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)182 (73.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000579Metagenome / Metatranscriptome1011Y
F002674Metagenome / Metatranscriptome538Y
F018973Metagenome / Metatranscriptome232Y
F027912Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_1000043151F018973N/AMRLPSAAICVSFVLLSACSTPSSIKPVEYLDDRTAMTVGSLKEPIELVPSLRQGGLHVITNLGKRLSFAYLGPVEWDRSGSIVYGLWVHIAPGTDRPIADIRSNAALTIVLDNGTRVLTPIDAPQLGRGAYQPVASWGQTAYFELTVEMLKQMAGSEKLELDVRAADDSVVSFVASGATRETLTDYMHARGITDD
Ga0193726_1000043157F027912N/AMEWVLQVVDEVDDAVGALRLFAMGWSEEIGLTIASSAATCAVCAAFLRGVG
Ga0193726_100004370F000579AGGVAVNNATTISVIDFRRQSMVLQWHSLGGTWTACDMPPALVHGIALIRPTGPNICIYGQGGRLRLQVGPNQYALAENSPRISCTRGIASFGFRRRFTVKSSTGGVLFSHSYWTNQGRDFYRWLADRAEDPDWRISCGRQWSEGVPSATLRPH
Ga0193726_100004398F002674AGGAGMRRAQMIILSASMLSLVGCGAAGAGGGSEPSESQMKEAMLYTMNHPPGIQNSEPITIKFFKKEACDNPTPMGYNCRFDIQVASANIGASMYNNVPMGFFYMDKETGKWAMRPPF
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