NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000090

Scaffold Ga0193726_1000090


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000090 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)156525
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (72.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001398Metagenome / Metatranscriptome705Y
F014647Metagenome / Metatranscriptome261Y
F018720Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_1000090107F001398GGAMAGFEHLIQSYDVGDLLDEIASAEPPAYLRRCFAEGSSAPVLSWHRVQQLAVCAMVLDAIVNDRDYEFLEREMIADWRMHYARACMKIKDTALQALHRVLERDRPADQDAAAELETLANRLAGA
Ga0193726_1000090137F014647AGTAGGMSSRLRRNFSGAFLPQNRGNGAWQLARPAPHEITLFLRDAERSAELSFGTGPLIDLGIEWHAEKVLLTFISNERVASVEAASAIVHEPLQRLYESLPLVSIDANARRFWRRVFRLVRIPGGRYLLKILARSRRR
Ga0193726_100009097F018720GGAGMSTSSSARMGIVAFLAILTVSAGTMLWLFWRFPLMTAIVTLAVFAALVVLARLARSIEVDLKELDQTEQSV
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