NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000116

Scaffold Ga0193726_1000116


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000116 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120475
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (69.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000362Metagenome / Metatranscriptome1231Y
F023164Metagenome / Metatranscriptome211Y
F091041Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100011610F023164GAGGMGHWKFSTLSLSVLFILSCAAPEPPPKKTVFDPLLQPIQRAKDVQITVDKQAEETRKALESQERGETSP
Ga0193726_1000116109F091041N/AMGNSLANAMHQLQLGEELLTAGVDELVRRWQASANALGKLCIGPERWQAAFRQMQAPLNLAEILRSRTIL
Ga0193726_100011619F000362GAGGMNDNTQPNLAVRVDPNEMVRYVLDLMAATPDSADAPARSMALAQRQWGGDTPLARAAQLRWSALNRAFRDARVGTWTTHPMRDQIHVPAALIAAAGVARLTMAEQEVVFDIPTLLDATLELCEPVGHA
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