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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020021 Open in IMG/M |
| Scaffold ID | Ga0193726_1000196 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 83123 |
| Total Scaffold Genes | 83 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (69.88%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003775 | Metagenome / Metatranscriptome | 469 | Y |
| F011509 | Metagenome / Metatranscriptome | 290 | Y |
| F028580 | Metagenome / Metatranscriptome | 191 | Y |
| F035647 | Metagenome / Metatranscriptome | 171 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193726_100019638 | F028580 | AGGAG | MIKNGMAVLTLAPVASLMLAANLAYADDYLSPTNERVRLSLGVMRVSNTTDLRLDSSAGLQGTPVNAESDLGLDSADFEPKFQAMVRVGERHRLRFDYFTLDRTGQTTITTPIVFRDVVLQAGDPAQTTMSLRSLGISYEYSFIHRERFELAATFGINDTDLSARARVATETRHVNQLEDQAGPFPTFGLDSTYVVSKRFYFDARLQYFKLAVDHIDGTVSFYELAALYRFRPNVAFALGYTAAKADIASRQTTSGGFFDLNSKGPEFFVRIAF |
| Ga0193726_100019642 | F011509 | AGGA | VQSQIIALLVPEGSHRATLLVRRGDGQFALEGIDARVASATRVAATWFRQGAAIVDPVTSTVVGYEVTEGSAA |
| Ga0193726_100019668 | F003775 | GGAG | MSSLDLDLDAHMNNLEMEWRQAYESSIVARADYQSLAASPKANARLLVLARDRLERTEALKARIMARIERLEDDILGEDHG |
| Ga0193726_100019669 | F035647 | GGAGG | MANGYVDGEPAVTLLERRWFAAFKAASDARAECEALLESLANIQAAWSQARARLSDLEALRDALGEELEAVHGDERPMRAKESRFESAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |