NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000356

Scaffold Ga0193726_1000356


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000356 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52747
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (70.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F012600Metagenome / Metatranscriptome279Y
F020936Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100035639F020936GGAGGMSEYTVRFPITCPKCGTERLTEFPADVVEDALVRGSDICLVATCHDVIWDASAVELEQIREYLGATRSAAQPSRLAGVES
Ga0193726_100035644F001426N/AMRPWTPQTLYDAKPWALIAIGTVLAIGMMLWSLRAGSWTVWRGLLCFAGAAFAIVGGATLQLRQDYRARSKWRRDGAP
Ga0193726_100035647F012600GAGGMTSDDNTRDTPDSNFSYGVRELRQSAAQRELRIETAPLKAANEKSGFDPYNTSGSFDRKKNWMRVGKR
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Institute for Fundamental Biomedical Research
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