NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000360

Scaffold Ga0193726_1000360


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000360 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52266
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (79.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012728Metagenome278Y
F019987Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100036022F019987N/AMRYKFTVEPAYLKVDLFDQHTAEETQQVLAAVAAEARKHGRSQILISAHASRPIFRVSQHGLPDYFKELGEVSRCRVALTGDSPELRLSQEYIESLAQRHGVNLRSFRSEQAALQWFKDRRWADRRERQEAWDGKDRRQQWRRSLVGTHPDDSGDVHA
Ga0193726_100036041F012728AGCAGLKRLFLALPLALAIAAPPALAALVFRVGDTVYVDGKQYTWEEWGKIRDNPEALKQPAASAPVAGPRAAACITAIYYDEFPSEDERFQCSADLGMLTRGQIVEKGWKVDFVEKVPPPSDQQAQSPRGMPLFKYKLVISR
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