Scaffold Ga0193753_10002105

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193753_10002105

Scaffold Ga0193753_10002105

Overview

Basic Information
Taxon OID	3300020034 Open in IMG/M
Scaffold ID	Ga0193753_10002105 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16172
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9767	Long. (^o)	-107.0044	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038211	Metagenome / Metatranscriptome	166	Y
F083812	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193753_100021056	F083812	GAG	VSEHDDHSESITRYEPSGIEERHGIIPTWLAIVYAALLLWMVWYTIVFWTDKG
Ga0193753_100021059	F038211	GGAG	MFGPTFFRIIEITFAAYMVPALLVPLVWVAAWVLKRRLPVNTQPTIEVEGQFRMLFWLFLIWFLLFLVVIAGASLNRGGGTAVALCWIVYAATNLLLAWFLLRFTTAYGLIPDGPVADRVFMRFIAVVATQPLMTAAAFAVLNNVMGVAWNAQVPELPAIQEGI

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