Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1003921 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1003921 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24610
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (23.53%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24610

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (23.53%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F008815	Metagenome / Metatranscriptome	327	Y
F009808	Metagenome	312	N
F012574	Metagenome / Metatranscriptome	279	Y
F035767	Metagenome / Metatranscriptome	171	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100392112	F052594	GGA	MAAKTYGLDKKQIALCDAMIAKYPKGIRTNNVVSSASTLVSFYNSKDERNKQFYQYMNPERMVSLLWQVVKINNEKEDVKESAVRLLNKLLQDIVVN
Ga0207193_100392117	F008815	N/A	MPSFTERVILSKPNDFNNIPNNAGSGGVVSSNVTETINNVTVNGSNVSIFNQEFIDTTSAILTWTQNSGKLPTTNLLASIHVYQNGQKLVDSQYSITLPATITIDSNTHYDGSNYIVFAININ
Ga0207193_10039212	F002778	GAG	MMEIKAFCDEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSQLLMICIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRGVKQLLLTTSELYRTLLSSFRQERILVGHMTT
Ga0207193_100392125	F035767	N/A	MGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRVVGLADAVIEFAELMEQCTIKERSRVIDSATPIALDVYKSLVPVSSKPHRISSNPFKNKKMQGWEERDGSSIIVQPGNLRKSIIDLSKNLKSYRYAVGAVGPLYKRGTMNKGINSSEGTNGFYAHMVFGSTRAWYNKIVVKARNLSRERVIKTMRNECIFIMQERPKKFWQVL
Ga0207193_100392133	F012574	GGAG	MRKHEYAQQVRQINSTSGYFHRFYELSGECRTHQEAWQKLEEEREELGLDEKYTTYNSFRKAKSNYMDMKFV
Ga0207193_10039218	F054865	N/A	MVLMEVKTNRFIIKYKEGIVSVAANDVAEAIERFKELRIETSAKELTIVPADEMFKRREEIFKGSD
Ga0207193_10039219	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQTTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGLKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEANESYTIDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGVWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1003921

Overview

Ecosystem & Geography

Associated Families

Sequences