NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1010750

Scaffold Ga0207193_1010750


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1010750 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12906
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003643Metagenome / Metatranscriptome475N
F008131Metagenome / Metatranscriptome338Y
F043406Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_101075011F003643AGGAGGMKQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAAILPVILKALNTNEPAFGFTKK
Ga0207193_10107504F043406AGGMINLQEEDWFIPGVKQIKVGLGESAKQIAVVLDEQIAFFIGVKHEIAEKLINSTSFFECEAVNGLFCVSFISEGELDQILCNEMTQAALLSNPQLVYVDKDIQRYAEKAEVGWIYRDSQFIVPGVYE
Ga0207193_10107507F008131AGGAGGMSVKRLVPLHAIALAENPENSRIGDIYYNTDAEELRFFDGSAWNPVGSGTITGLLDHIHTYDGAIFSVENIEVPASDIIDGGTP
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