Basic Information | |
---|---|
Taxon OID | 3300020048 Open in IMG/M |
Scaffold ID | Ga0207193_1023037 Open in IMG/M |
Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7651 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (90.91%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Manganika, Minnesota, USA | |||||||
Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006543 | Metagenome / Metatranscriptome | 370 | Y |
F011214 | Metagenome / Metatranscriptome | 293 | Y |
F012108 | Metagenome / Metatranscriptome | 283 | Y |
F053106 | Metagenome / Metatranscriptome | 141 | Y |
F074795 | Metagenome | 119 | Y |
F104766 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0207193_102303713 | F012108 | AGG | MINLQLSVRDAFELSNNCSREIYEKIVNAFEIALGVNQRCTVTITGGMTLDNRIYCIKAIRLHTGWGLKESKDWSDILVGGWKYDKFIPASANVRNSITLKTPEAAENLLRDLVEHGCEGFLS |
Ga0207193_102303714 | F006543 | GGAG | MQKFTFNVDVVATELDRDAIVESLTAALNDALPGDVHANVKAGEVKSFSEQGYKVWRARVTGVTAEDAGDSANPKKVKETVEA |
Ga0207193_102303718 | F011214 | AGAAG | MILEAIRKEKSIRWHERGDWFLNGELDLDYLANVTWACESILADGTALPDMWFYTHIYDARLVSLEKYMNVYASVHNDTDMGEALAQGFKLFAWCDSDEKIAKKRPRSKVKTEAWRKALPKLVVLNGVKFITCPEIRRGRGVVTCTPTEGSVSCEMCPKGLANVLFPSH |
Ga0207193_102303721 | F053106 | GGAG | MAKYYVKSGTLEVILSKKNAFEAAIAGLLLTNKFDTIDEHFYVDERGYRDYVSADPKTSVVATKSIVRGAGWELSRDDD |
Ga0207193_10230375 | F074795 | GGAG | MTKEEATIKVLKVLNSRMAVMCKPVRDEALTLAEEHGITVSELINEYEKIAMRV |
Ga0207193_10230379 | F104766 | AGG | MEWISFFDRQPEDGQGIWYYGQHIGVWAGEYRYCPTDKYSHHIIHCHESLGVVDRMDAPWWMLDDGKMNRPEKPSRIVPPDYPSG |
⦗Top⦘ |