Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1036934 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1036934 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5458
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5458

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F049637	Metagenome / Metatranscriptome	146	N
F069672	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_103693412	F049637	N/A	MNILKSDELGVPSTLIAIFANVSQVIGLSFVNMFFTWIISILSIIYLIYKIKNEKGKFDSKKDEERK
Ga0207193_103693413	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIEYPVLWTVVKPSVYSGTTMRYDLVLLFADLLTEDKSNRLQIQSDQMLVALDFLAKLKLDNDYSFNTAPNAALEFFQERFDDFTAGVSIAIQVVAPMPLNLCVIPTES
Ga0207193_10369342	F036704	N/A	MWIEIEVMLSGNTIDWKSLGLEVQHEWSRRMVRAGDIQYVQELMHDIQIIAFYDNTTCLVKGNYKEIRSEILHLDQESDLD
Ga0207193_10369343	F001775	N/A	MIDQRIQIAVISFIAGVILSFILFPRPEVETIYKFETKVESDTIYTHVVDIIYVPKTKIKTEVLRDTILKEYEPKISLFKASFPSDYGSTYVSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIQKSKGIYLGAGVNSLLQPSGKVSYLDNKYLFEYQYQPVTKVHSLGISKKLF
Ga0207193_10369348	F069672	N/A	MKYLVILFVFFSFQCQAQYYIMAAPNVAFDTKLQDTKNLLGGTIEVGKYFGDTAIGINSGWWTFDKKDFYQEVMATFPIYGRFSISAAIGYFYHHKDITMEYDFNYTVPMEDGYSFVLSYGAQSAFGDTFGAYSIGINKDFKLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1036934

Overview

Ecosystem & Geography

Associated Families

Sequences