NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181594_10126054

Scaffold Ga0181594_10126054


Overview

Basic Information
Taxon OID3300020054 Open in IMG/M
Scaffold IDGa0181594_10126054 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009955Metagenome310Y
F022192Metagenome215N

Sequences

Protein IDFamilyRBSSequence
Ga0181594_101260541F009955N/ANAAKAVDQALQALGQASQDLYRCRYGDREVNAALEWNNESEIEGGPLSRELRADAIVIERMRKVVAEFAQEKKA
Ga0181594_101260543F022192AGGAMSTGSTSGGGYPVPSEQFNAAEHARNKILRANQFQQLVLSQWIATYLDFYGLLPDGGSRYTTAQMQAIIDAMPAATARDIMSDSAAFVAFVNQAAPGVIADKYQSPAFAMTDDGQQITVGDLRPEWQPQPEV
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