Basic Information | |
---|---|
Taxon OID | 3300020057 Open in IMG/M |
Scaffold ID | Ga0163151_10001346 Open in IMG/M |
Source Dataset Name | Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 41573 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (76.09%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Antarctica: Lake Vanda, McMurdo Dry Valleys | |||||||
Coordinates | Lat. (o) | -77.5281 | Long. (o) | 161.59 | Alt. (m) | Depth (m) | 19 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F054395 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0163151_1000134628 | F054395 | AGG | MVKLCAQSVDLPIGPMVEQVAAGQLWKGGLHGIGLFDGALFDAMAAIRRKAGESLLEHMDVEDCDGEGADTAAGASEPAGHFTEQGGGGSLEPVVGLVVQRKKGGQSRA |
⦗Top⦘ |