Scaffold Ga0163151_10093885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163151_10093885

Scaffold Ga0163151_10093885

Overview

Basic Information
Taxon OID	3300020057 Open in IMG/M
Scaffold ID	Ga0163151_10093885 Open in IMG/M
Source Dataset Name	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1984
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Lake Vanda, McMurdo Dry Valleys
Coordinates	Lat. (^o)	-77.5281	Long. (^o)	161.59	Alt. (m)		Depth (m)	19
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041295	Metagenome	160	Y
F052452	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163151_100938851	F041295	GAGG	MRKQVARKAGRPPGGVDGQRVRDYPQVSIRVPPKLYAQLAVLSRSTGLSRLDLFIRAIDCYEGHLRSQRRRQRRRVAA
Ga0163151_100938852	F052452	GGCGG	VRAEVRYAVPSSLANTLERGSIVIKTFFALLVAAACAMPLVAGAQQVDPGKMVQMFSQSVRTAGANLQIVILNDRTVEALFGTSPAKAAFRTKARMTGVLFVQGTTNKEFEFTPDVTVVQKGETMQGKVTSMKNFTAGKIKKGEQIQGLVELPKKLDLYETFKVTIGGDSVEFNLNEDDLRDYGNR

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