NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180113_1002103

Scaffold Ga0180113_1002103


Overview

Basic Information
Taxon OID3300020065 Open in IMG/M
Scaffold IDGa0180113_1002103 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9231Long. (o)-106.9513Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012326Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0180113_10021031F012326AGGAGMRRRGWWWRSLVGLLLLAGVVGGCGGDDHDDDHHDGAVCFLAGEREPNATPLTAQFLGDLFVDDCVAVDGSLFDPLDVDSYRVLVQESLTLVVTLDHSPFVDFDVQLFDADTGQLIVDCGSNIVPEGCDVSFVVRGFDIAVDVVVSSVIGAGTYTLTLDAP
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