Scaffold Ga0180108_1078692

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180108_1078692

Scaffold Ga0180108_1078692

Overview

Basic Information
Taxon OID	3300020066 Open in IMG/M
Scaffold ID	Ga0180108_1078692 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3691
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9232	Long. (^o)	-106.9513	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016640	Metagenome / Metatranscriptome	245	Y
F055478	Metagenome / Metatranscriptome	138	Y
F064480	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180108_10786922	F064480	AGGAGG	MSSPTDHIHEGPDQTARPSTDAPVADGHLDTPREMEASFEEIER
Ga0180108_10786923	F055478	AGGAGG	MPPIMARWGIRGMDDFTVEELARLHQKLEGWVRERVPQKERTRRRPWVMQPKTAHSA
Ga0180108_10786924	F016640	AGGAG	MTSIIIVVVVMACASWMAWSRWNYWRTPIRAQPSAEISPKTLAFEAFTHGNTCLAAGQWADATAAFEQARALDPKRPFVAERLAEVARRQHAPSAPAPVGRF

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