NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206356_11111547

Scaffold Ga0206356_11111547


Overview

Basic Information
Taxon OID3300020070 Open in IMG/M
Scaffold IDGa0206356_11111547 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3259
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032840Metagenome / Metatranscriptome179N
F103690Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206356_111115473F103690N/AMSTGSKAGLWFVRKHPRKAAKVGMTLARHPKRTVTIVKIGRAAPGMARKARDAKDDPRLREHMNETRDALSSASKRLRGSDDLAGAVTDEKLWSELRRAAAAMAAGYAAAQSPNPKPKRRRLRKLALTVGVIGAGAYAGYRATRGAGDQA
Ga0206356_111115474F032840GAGGMSEYQVRARLYDPPEGVRRLDSKLACWRMNAAHMRGEEMRQAFESRLDKRTPDVVAAPAASGKGPRIRLIA
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