NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194113_10014653

Scaffold Ga0194113_10014653


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10014653 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9020
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004051Metagenome / Metatranscriptome455Y
F005177Metagenome / Metatranscriptome409Y
F018349Metagenome / Metatranscriptome235Y
F031384Metagenome / Metatranscriptome182Y
F040535Metagenome / Metatranscriptome161Y
F047643Metagenome / Metatranscriptome149Y
F078406Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0194113_1001465313F078406AGGAMLSTATALIKATEDAIFDDEAMSFAQEFMRRAKDLDEVDFAKSIYIYSTLVASLAVDKAMKVLLTKEQVVELCSCIDELEKIQDEVINGK
Ga0194113_1001465315F004051AGGAMTINGYTYRVGDLFTTLKSKKTGIIKEIIPNASGSVRVLLELPTKETRWTSVSAKSLE
Ga0194113_1001465318F005177GGAMTARFRVEIYDEVKDNDLTLYFDQGVDKDYLTELAFSNMYKFQGNIRAYVYDDLNQKKTTCLVLNREFLPPKPG
Ga0194113_100146532F040535AGGAVLVLDYTVEKEGNLITVSDRLMINERQINDLMDSLVANGFTVEAMSVAPAIL
Ga0194113_1001465322F047643AGGAMYYKLHTPLGKACQQAYWDAEWSGLDPYYLGNNVFEIGTGHVEKVTSLISKYKLDILVESEYTPTGYKTDRRQYGLQRRF
Ga0194113_1001465323F018349AGGAGMDYRDGFEDGVKFTREVIIANIRKWAETQSDYDAQTLDWVADRIEYGTLDDSLG
Ga0194113_1001465326F031384AGGAMPNWCFNGLTIEGNPDSVNNLIAQMNKPFVMTHDSWNMESNEMEAIETTYSNPVFAFHNIWNHRLENITDLEYTQQMPKST
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.