NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10045491

Scaffold Ga0194113_10045491


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10045491 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4328
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F012964Metagenome275Y
F098938Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_100454912F012964GGAMEEQIPPSQAPLPPQITPEQIEVMKARAREFAIQQTMVQQASNPQQQTRVVYVRRNFTVAELLLVILLSCGIVTGIQYTWNLLSNLLPKIEIKVR
Ga0194113_100454913F000973N/AMNYGLRKGLEDVAFELKGIRNILASMWHSRYENGETDVLNPEAYADEYISTEECAKRLNVSDQTLRNWMAIGRKEPSKGWVEGLHYVNASPNPNKKAVIRIPWNNLVRSFARNPEFKSEDYRKPKSNLYRTKAYDPLE
Ga0194113_100454919F098938N/AMYHSAAGFLDSFVQDEVKCRCLDLEEDFGQPIDNAENDVPLYDMYNRGLVACEQGMERNPLNIEGMERPGLT
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