NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10129371

Scaffold Ga0194113_10129371


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10129371 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2138
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F005412Metagenome / Metatranscriptome401Y
F005478Metagenome / Metatranscriptome399Y
F021760Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_101293712F001968GAGMFDELWSEIQDMPGEIFDMDIPELKDEKFDLNEYLAADYDY
Ga0194113_101293713F021760N/AMCGPAFEYTREDFLNDASDEEWAAWEKNAAELEVPLDYYIEEFV
Ga0194113_101293716F005412N/AMELTKSFPPADAFVEMITEIDYKKHFNTFMDGVEIFCAFVAAIAMITAEKWQEHNMTERTQLFVLRVIEGAKTFWAWVKNVFVPECKALYQDCRNVYNYVCANR
Ga0194113_101293718F005478GAGMYDDYDLEYSFSNDYNLDEDTYYEYHAQHSDVDLDEEYTRDTQDYDTLAYRHYA
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