NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206349_1456005

Scaffold Ga0206349_1456005


Overview

Basic Information
Taxon OID3300020075 Open in IMG/M
Scaffold IDGa0206349_1456005 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1497
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027072Metagenome / Metatranscriptome195Y
F027763Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0206349_14560051F027072AGGAGGMKRLMSLWSRLAAEAADQCYTSATHDINTVMSRVEHEGLSFLTITLPDLGKSAQSWLDQGRVTNHPAF
Ga0206349_14560054F027763AGGAGVAFTDPQSITISAATTPLPRTFSSGDESAYTSADGLIRLSVGHSLVKQGRARRVLRIDHSKLSPDPYKTSENVKVSMANYIVFDLPPAGYTNAEALAVYTGFKALYTAGTDAIIVKLLGGES

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