NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206350_10544950

Scaffold Ga0206350_10544950


Overview

Basic Information
Taxon OID3300020080 Open in IMG/M
Scaffold IDGa0206350_10544950 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040542Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0206350_105449501F040542N/AKAPVQTPAVNPKPPKCGTGFGPELPTPDGLIAWNDTSGTGYNTAGGADFTCASKTKVKAVWVLGYNAPANPEQYNVTFYKNDGAGGSDEPDDKSVVCSYTGVPGAGGGSYPTHVLTKLKLPTACKLKAGHYWVAVQDNDSAGPWYWEMTSQLGGTTQADWDDQNNIFGSGCTTFDNNEYLQQCLGYTYPDYMLELH
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