Scaffold Ga0194110_10038641

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194110_10038641

Scaffold Ga0194110_10038641

Overview

Basic Information
Taxon OID	3300020084 Open in IMG/M
Scaffold ID	Ga0194110_10038641 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4485
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-4.9054	Long. (^o)	29.4853	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F015730	Metagenome / Metatranscriptome	252	Y
F073599	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194110_1003864110	F015730	AGGA	MLSKKTLDKIVAEYQNGGVIGNHPELTTAERKWLVRYLITKC
Ga0194110_1003864111	F002489	AGGA	MSQEKENLEDNLDMVNYIMLSRIYDLLTLIATKLVGSDDVSKMVQYHDQGYLLGPAPSYTPNDEKE
Ga0194110_100386419	F073599	AGGAG	MANLYNIESLLIGKTYRSNSLTGEIVSAEKHPKSVWYEGCDAWLVGVRSNTGTYTYRSVAVACD

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