Basic Information | |
---|---|
Taxon OID | 3300020084 Open in IMG/M |
Scaffold ID | Ga0194110_10038641 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4485 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -4.9054 | Long. (o) | 29.4853 | Alt. (m) | Depth (m) | 1200 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002489 | Metagenome / Metatranscriptome | 554 | Y |
F015730 | Metagenome / Metatranscriptome | 252 | Y |
F073599 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194110_1003864110 | F015730 | AGGA | MLSKKTLDKIVAEYQNGGVIGNHPELTTAERKWLVRYLITKC |
Ga0194110_1003864111 | F002489 | AGGA | MSQEKENLEDNLDMVNYIMLSRIYDLLTLIATKLVGSDDVSKMVQYHDQGYLLGPAPSYTPNDEKE |
Ga0194110_100386419 | F073599 | AGGAG | MANLYNIESLLIGKTYRSNSLTGEIVSAEKHPKSVWYEGCDAWLVGVRSNTGTYTYRSVAVACD |
⦗Top⦘ |