NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194110_10124911

Scaffold Ga0194110_10124911


Overview

Basic Information
Taxon OID3300020084 Open in IMG/M
Scaffold IDGa0194110_10124911 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2071
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F095469Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0194110_101249111F095469N/APYKVQGRFGWSSVPQNVEQAAAELMKDYFSKDTVWRNKYVKNISTFDWDFEYTGNAYTGTGNSFADNLLADYILTAKAEII
Ga0194110_101249112F001229GAGMSSIVDSVLSMNLDVYRQFEIQDSDTGAIVRNWNFYKTVPCHVKGIISNSATTRSGDKQVFSNRYLNDQIIQVRTADKLTIREKVTNIRDSDGSVIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0194110_101249113F001900GGAGLDNSGLLVQASSGLERMMYANQKGPLKDSTVAQVSAYVYYEAAVLSKLTSNAQFKGAFTKVIFDQINTDFGNYIDALARARTKSLHHVYEWKRTGVPTARLFKLNKVSQEGLSFKINYEFLPSRSMVPSSTRKRRHVFVNKAAVIEAGKPLVIRPKNAERLVFEYDGEVVFMPKGKPVTVRRPGGSGATNQFTLAHSRFFSGNLVNQSIKRSGFQRLFNSGITKALRVPSNIKKVQYSFSPNMIRSQADSALMLAFGGAM
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