NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194110_10199831

Scaffold Ga0194110_10199831


Overview

Basic Information
Taxon OID3300020084 Open in IMG/M
Scaffold IDGa0194110_10199831 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1510
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066602Metagenome126Y
F102844Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0194110_101998312F066602GGAMDDNAKLQTADQTLKGAVVALVSYVALKRGWDIELVALAIPVVSGVLAYVSTLVNNRATACLLVPKKTKN
Ga0194110_101998313F102844N/AMPPYKVTGYSVVSEALPGTTEWAKQAASTSGGALWNNGTYAMRNVRGTGSATTRGIISNHARGVAMDLSWRRVEARKLGVNDGRVKAVKWLNVVLDNWETLGVQCVLDYFPNDYGRGWRVDRVEALPKKAHNHQAWVKYARPTIHGAPGGDWFHIEITLGMANDAGRVKRAFDAVFGVSTTPQQPLATVAVTTEKGKRRATTGKPDPA
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