NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194110_10293212

Scaffold Ga0194110_10293212


Overview

Basic Information
Taxon OID3300020084 Open in IMG/M
Scaffold IDGa0194110_10293212 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018160Metagenome / Metatranscriptome236N
F044372Metagenome / Metatranscriptome154N
F044982Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0194110_102932121F044372N/AMAISVLSGSPQAATPVYNKMLFKVSGSLTSGTNYRYVCDVKNAAGTTTLARLKCDKLPTTNFGFFDVS
Ga0194110_102932122F044982GGCGGMEFDVFVGGSGKKLTNVQREALPDFGITLEEGAIDNKSYALVKKWLDGVIVLAKQNLAKSDAIASNLLAASIKFEPIALTDTSFVVAIVANDYWKFVDLGVKGAKSSGRAPNSPFSYRDKKPIWKHRPPVRKIQEWIAFKSIPVQGRDKIAGNRALAINISNKIWREGLRATNFMSNAVTEDMVAVLTENIAEVLGKSISVATSR
Ga0194110_102932123F018160GAGVTNPLAGYGWLMVVWRMANKDVLKFDAIFDMKAVEFLNYAMLIHDILEAERQEAERMRRR
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