NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194110_10520538

Scaffold Ga0194110_10520538


Overview

Basic Information
Taxon OID3300020084 Open in IMG/M
Scaffold IDGa0194110_10520538 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)1200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042227Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0194110_105205381F042227N/AMAYGSMRRMRGYSAKVFGKDARLSRMTDNRVDPKIPLGAVLSTWQWGFVRLAPSTERIGDLLLDERWRAIVGLKPEHGGSPDRAAEILDGLSIDEWNEMMLEDFFIARRAGILTDDGPYGKRCAVVDLNELFKSEKVHCAQCQVREKTVLDAKGEKRTVLEYY

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