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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020139 Open in IMG/M |
| Scaffold ID | Ga0197143_1002057 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15642 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Nevada | |||||||
| Coordinates | Lat. (o) | 40.6614 | Long. (o) | -119.3661 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029452 | Metagenome / Metatranscriptome | 188 | Y |
| F036249 | Metagenome / Metatranscriptome | 170 | N |
| F092114 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0197143_100205713 | F029452 | GAG | MVMAMVYEYRCEQCGNVMLAKRTVDNRDDCPLCAVCNHSTKRVFPPRALIVVPRAFQLECAREAAKCVLPSTPAEKKYWDTFGLEE |
| Ga0197143_100205714 | F092114 | GGAGG | MARELKSIVASELEKRLGDNPPDRDIWLIKCKRLRELVSNLAPNQVISTSVPEGHSNLLLVNIQIKTHAMLQLLRGTLVDFDGNAELQQEFAKFLQDNEIVLREAILQRLVVGLGAVCVVGDSITGWRLQSISPHDLWWDTQRGNVIQPEWIAREYRDTQGVRYRELWEREKRYIQRVGDTDVRVEPNPIGEIPIVLFPAFYIPDTVYPVGDVELAYPQQAILDEVRRAILNMARRGAGFYSVKRGSIDETELVRLTNPDEVYVLVNEQDAIVPVNTPLPNSEWQALETLAKQDMDALMGVSEYIRGVLPTGRAKFATEVVASVAGQTVRIQTEWYNTKLAIERLARVYYKIKYGNQFGDIVPRVVEDDVSGMLQTDMLQREMGWQVSAGMPRG |
| Ga0197143_100205716 | F036249 | GGAG | MQFNPNTSHYASAIGAWLDTNFRDQFTATVAFMEKLKQRGAFKRGSAYLVQPLFSEGNNTVAGVSNFNAPMSIPNDTGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVVANDLFSNTDATLGKIAGIPYAVDRPTTTPNSFGGISRSNTTNPWWRCVVVDANNNPLTLQWLAQAYNLATENGGISPDIIVMPTDLFTAFEAQLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTVFIINSKDLMLVSQTDRPSAEPVEFPDRLVRGYKHGWALALVAKRLNSHARINNITP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |