NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1123328

Scaffold Ga0211732_1123328


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1123328 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2771
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11233283F038245AGGAMKIYFGNANDDMFGDGLFEANDNQYYYGVEHGTGPGGLDEVRLFDGCNRYLPVHVEAIPELIAALQEIQKIQQAVKQAQEMTERAESETTGYVYSSWNDEFEVDFDTE
Ga0211732_11233285F078719AGGMEVIEVYFLFALTTGITSCYVFLSPAVALARDTGVRNSFTENTWLSYLIYITITTITAPFSVLPIFIPSFAERFKAGLEKSVMESQT
Ga0211732_11233286F099303N/AMNFLEFTYTKADGTESKRAAIPLFGPTKFVEAIDVSQMPEDEFAVFCREFSALKSAQHEQTMAILEQFDLKHNYRKFNPEQMSDITTDYV
Ga0211732_11233287F070116N/AMSKFRTWDSEILTDAVKISLQIRTKIEEMCVATHSPPDGLPNSLIPTDNLYSLVCAYEAAYNALIENDLIKTGNLKTDKNIH
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