NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1343633

Scaffold Ga0211732_1343633


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1343633 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5078
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004696Metagenome427Y
F008491Metagenome / Metatranscriptome332Y
F011762Metagenome / Metatranscriptome287N
F073457Metagenome / Metatranscriptome120Y
F103233Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_134363311F008491GGAMAKKISTKVNYQVTELVNNLNEAATTISEQKRDFYTTKALYNAKRLSSILNKAKVGAMALVLTIGMVACGTASTEVKADSTAVDSTKVDSSVVAPVADTTATK
Ga0211732_134363314F004696N/AMDYAISKLKHDEVVLMKKIKSLQDGKPKWAASKQLDELRMAIKLLERYNDMTAAEAEEEDEYLKEIFEVNPPKAQA
Ga0211732_13436333F073457N/AMYMYKPLEFKDYSKTSKGALAQMIENPFKNFAASKMSLGKKTMCIVEYTDFTGKKHRIVCNNRKQMNEAQAFLSIFKKETATLKSIVSQYPIKLGRIEKKFLKELRSELKPLGFSNKFINEIAGW
Ga0211732_13436338F103233GGAMSKGQTDSELYEALLELGYDFGEYGTDEFDEDGFAETAVNIGYRWNETTKEWYNK
Ga0211732_13436339F011762N/AMSKKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKTRIFVDEESVRKFVADIEGESKMIKLETSLIKNVLSKREKKENLASTELSAMIPDLETTVPAMLRDNMATRPEDTDK
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