NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1371119

Scaffold Ga0211732_1371119


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1371119 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9683
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F004051Metagenome / Metatranscriptome455Y
F004431Metagenome / Metatranscriptome438Y
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F013527Metagenome / Metatranscriptome270Y
F020168Metagenome / Metatranscriptome225Y
F050376Metagenome / Metatranscriptome145Y
F085262Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_137111911F007263GGCGGMIAKDYLDETDFYLIKDEQHFCCDESQFVHVCKAHGEQMGCYYCAFDYTQDCEEQH
Ga0211732_137111914F001562N/AMEKTQFEKDLEIKESFIDLLNDVYPEVKIGYSTFTAAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0211732_137111916F000447AGGAGGMGYVEIFRMDNEGASWVDLSEATPNELLDLEIGLFQEGAI
Ga0211732_137111917F050376AGGMTLEEYKAHVEAQRKASLLKAIATMSEANATIGSLFNTKEAN
Ga0211732_13711192F004051GAGGMTIDNQVYKVGDLFTTLKSHKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAQTLGV
Ga0211732_137111921F004431AGAAGMTITYSLWDGAQLLGAGFTATSADEMNKVVTDLQKVSKNVVAHMRKVEQN
Ga0211732_13711193F085262AGGAGMSNLYSILSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0211732_13711196F020168N/AMTDLFGSVIAIILIGFLCSPIVLAVYMWNTAKIDNDNDGKDDLPYRWNK
Ga0211732_13711198F013527AGGMEHYEFNTFIVVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNESVEV
Ga0211732_13711199F004840AGGAGMYKITCAYDDNAPHWSAEYEKEFGAWENFFLFTDWGFADEYSTVNLHTPTGKCYTRIFYREGRKVLTI
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