Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1371119 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9683 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (77.42%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F004431 | Metagenome / Metatranscriptome | 438 | Y |
F004840 | Metagenome / Metatranscriptome | 421 | Y |
F007263 | Metagenome / Metatranscriptome | 354 | Y |
F013527 | Metagenome / Metatranscriptome | 270 | Y |
F020168 | Metagenome / Metatranscriptome | 225 | Y |
F050376 | Metagenome / Metatranscriptome | 145 | Y |
F085262 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211732_137111911 | F007263 | GGCGG | MIAKDYLDETDFYLIKDEQHFCCDESQFVHVCKAHGEQMGCYYCAFDYTQDCEEQH |
Ga0211732_137111914 | F001562 | N/A | MEKTQFEKDLEIKESFIDLLNDVYPEVKIGYSTFTAAEILECCDPIAFSIGLIEHEDYLAEMENE |
Ga0211732_137111916 | F000447 | AGGAGG | MGYVEIFRMDNEGASWVDLSEATPNELLDLEIGLFQEGAI |
Ga0211732_137111917 | F050376 | AGG | MTLEEYKAHVEAQRKASLLKAIATMSEANATIGSLFNTKEAN |
Ga0211732_13711192 | F004051 | GAGG | MTIDNQVYKVGDLFTTLKSHKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAQTLGV |
Ga0211732_137111921 | F004431 | AGAAG | MTITYSLWDGAQLLGAGFTATSADEMNKVVTDLQKVSKNVVAHMRKVEQN |
Ga0211732_13711193 | F085262 | AGGAG | MSNLYSILSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL |
Ga0211732_13711196 | F020168 | N/A | MTDLFGSVIAIILIGFLCSPIVLAVYMWNTAKIDNDNDGKDDLPYRWNK |
Ga0211732_13711198 | F013527 | AGG | MEHYEFNTFIVVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNESVEV |
Ga0211732_13711199 | F004840 | AGGAG | MYKITCAYDDNAPHWSAEYEKEFGAWENFFLFTDWGFADEYSTVNLHTPTGKCYTRIFYREGRKVLTI |
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