NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211732_1386701

Scaffold Ga0211732_1386701


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1386701 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2927
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F005090Metagenome / Metatranscriptome412N
F011075Metagenome / Metatranscriptome295Y
F011392Metagenome / Metatranscriptome291Y
F029655Metagenome187Y
F070108Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_13867012F011075N/AMFETNLSIIVGSHLNDAMIEVSINPQLAKKRLKFVKAITFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYVKGTNYETK
Ga0211732_13867013F029655N/AMNKLVFKINEKACVAFLKKYPMVCNLMENSNGKDLLSAYKKFLKLKDINEPKLGGRGECIGSVSFGTKTFYKYDWDACSGWAEVFEFYKSKKSK
Ga0211732_13867014F011392N/AMLVVDGLKFLNFIKVKKVNNMNLNIKELNELIYSLGITAHNGNFCNREVNESLLERLYCELNERIAEEAIDEEVESDTYYVSNEEADEDYRLSLLQDSQRYESSVSKDYDNHLSNLKVRGYVTQSLLDYVDKKGAVSHGDLERYYKSITGSNSFSHILESLRTPYKNRKTQRYIAKEGKRYSDAKYVIKIANPSNWVEVDY
Ga0211732_13867015F005090N/AMKKKMKFVWCGINFELPAECLRTTDYWGKKLDNPYISIGRKECPAIAKQFMKAKYPQLLVWGSSETFANGNSASIYVCNADGSDLDVSSKEWNEINTFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHIENKAPFGTWPDVVRMLKAMVAGEYAWGPISLDKAIEKVRDYKVTEPTIKKALELI
Ga0211732_13867016F002303N/AMDIREKNRERAIQFAKEWNCENVSDHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIFLLTMCKANCFTQN
Ga0211732_13867018F070108N/AMSFTIEEQMDIELILTEASAYGMSAEVELYAQKYLSEGCTPVEAYEHAYNEWIK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.