Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1386701 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2927 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002303 | Metagenome / Metatranscriptome | 573 | Y |
F005090 | Metagenome / Metatranscriptome | 412 | N |
F011075 | Metagenome / Metatranscriptome | 295 | Y |
F011392 | Metagenome / Metatranscriptome | 291 | Y |
F029655 | Metagenome | 187 | Y |
F070108 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211732_13867012 | F011075 | N/A | MFETNLSIIVGSHLNDAMIEVSINPQLAKKRLKFVKAITFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYVKGTNYETK |
Ga0211732_13867013 | F029655 | N/A | MNKLVFKINEKACVAFLKKYPMVCNLMENSNGKDLLSAYKKFLKLKDINEPKLGGRGECIGSVSFGTKTFYKYDWDACSGWAEVFEFYKSKKSK |
Ga0211732_13867014 | F011392 | N/A | MLVVDGLKFLNFIKVKKVNNMNLNIKELNELIYSLGITAHNGNFCNREVNESLLERLYCELNERIAEEAIDEEVESDTYYVSNEEADEDYRLSLLQDSQRYESSVSKDYDNHLSNLKVRGYVTQSLLDYVDKKGAVSHGDLERYYKSITGSNSFSHILESLRTPYKNRKTQRYIAKEGKRYSDAKYVIKIANPSNWVEVDY |
Ga0211732_13867015 | F005090 | N/A | MKKKMKFVWCGINFELPAECLRTTDYWGKKLDNPYISIGRKECPAIAKQFMKAKYPQLLVWGSSETFANGNSASIYVCNADGSDLDVSSKEWNEINTFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHIENKAPFGTWPDVVRMLKAMVAGEYAWGPISLDKAIEKVRDYKVTEPTIKKALELI |
Ga0211732_13867016 | F002303 | N/A | MDIREKNRERAIQFAKEWNCENVSDHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIFLLTMCKANCFTQN |
Ga0211732_13867018 | F070108 | N/A | MSFTIEEQMDIELILTEASAYGMSAEVELYAQKYLSEGCTPVEAYEHAYNEWIK |
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