NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1466982

Scaffold Ga0211732_1466982


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1466982 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F005879Metagenome / Metatranscriptome387Y
F024315Metagenome206Y
F087190Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_14669821F024315N/ASVEELRSINEMVIGLIKQKRTIQSLEKKVGLQVGMKVRVNHPKLQGRELEVTKINRTKANLRVVGGFASYNVPVSLIEY
Ga0211732_14669822F002303N/AMDIREQNRERAIEFAKEWGYENVSSHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCKANCYV
Ga0211732_14669823F005879N/AMFNEEVFWKDGFEGECRGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFSDNNLEIIVKPKN
Ga0211732_14669827F087190AGCAGMNKKEVERLAELYFEKTVKLLGESKYHSHTPYLVVERSPESDGIDNEWHGEYVPEVNEIIIYSDNIT
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