Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1466982 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1584 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002303 | Metagenome / Metatranscriptome | 573 | Y |
F005879 | Metagenome / Metatranscriptome | 387 | Y |
F024315 | Metagenome | 206 | Y |
F087190 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211732_14669821 | F024315 | N/A | SVEELRSINEMVIGLIKQKRTIQSLEKKVGLQVGMKVRVNHPKLQGRELEVTKINRTKANLRVVGGFASYNVPVSLIEY |
Ga0211732_14669822 | F002303 | N/A | MDIREQNRERAIEFAKEWGYENVSSHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCKANCYV |
Ga0211732_14669823 | F005879 | N/A | MFNEEVFWKDGFEGECRGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFSDNNLEIIVKPKN |
Ga0211732_14669827 | F087190 | AGCAG | MNKKEVERLAELYFEKTVKLLGESKYHSHTPYLVVERSPESDGIDNEWHGEYVPEVNEIIIYSDNIT |
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