NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0196977_1000030

Scaffold Ga0196977_1000030


Overview

Basic Information
Taxon OID3300020146 Open in IMG/M
Scaffold IDGa0196977_1000030 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105574
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (51.16%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068101Metagenome / Metatranscriptome125Y
F068102Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0196977_100003042F068102N/AMVLLSVLIALAGCQKREPLTEAKAKEIVSSWMFKREPVYAEVPQRVWWTPKAPKDEYDEKAVRTLRNLEREGLITVTETVTSDSAEYIAKVTKKGFPILGTAPSHRGPVYRAQICEKVYDGLRNFVRHPSEETVGHAELVWHYDNPRALYPLFETKIDKPLKTPYVSNVSFWYAKHQWKFEVNVRKTKAA
Ga0196977_100003056F068101GAGGMAQRNPDQHERSAAGLDFDDGAIREKAQALGAKMVQEGPEALLDEIENLLPESWRDQIRTFPVAAVALGLGVGIWLGMKKSDEIIAAGTSLVSAAAMANVSQVMDKVRGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.