NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196977_1000209

Scaffold Ga0196977_1000209


Overview

Basic Information
Taxon OID3300020146 Open in IMG/M
Scaffold IDGa0196977_1000209 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35604
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0196977_100020918F002548GGCGGMPKFEYESHTEPDSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVDCARKAILELFPGFELRYERIVQPGFTRVLQQRWPEEELQYADPHEMVN
Ga0196977_100020921F092677AGGAVLSCVRMRVSPYFTGLLAALVVACGADQQAADHQAEWRDVLRHKRAAVAPDATPDHKQVYADSVAAFVAKHPNHGRAAEVWMRLQLEFADDLSEAGRYRDAIRFYRAVLTKHPESDHARHGMAVAAARLAVTHEGMLALRKGMSHRDVAGLLGKPMPGWKRTQKRAGTAFEAWYYPTRTGAVAAVYFRDGKVFAAEETSNQRLGRLGS
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