Scaffold Ga0196977_1003848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0196977_1003848

Scaffold Ga0196977_1003848

Overview

Basic Information
Taxon OID	3300020146 Open in IMG/M
Scaffold ID	Ga0196977_1003848 Open in IMG/M
Source Dataset Name	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4281
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.305	Long. (^o)	-116.2547	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196977_10038482	F002324	GGAGG	MGEVRLFQICYEGELTVEISHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRSQLATDSRLLVACTQFTTARDFLLVRHSLTPGADYSELHDALDRLGTVVALPFESTFVIQSLYANEMRTDVHTLGLALGELCPDESLMVTGVSHDWAYCDSGVSRMFVGDAFETAQFKSF

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