Basic Information | |
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Taxon OID | 3300020147 Open in IMG/M |
Scaffold ID | Ga0196976_1000192 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 41478 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (56.52%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.305 | Long. (o) | -116.2547 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F094358 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0196976_100019220 | F094358 | GAG | MSLDLDGLQVAYLGVALAHYLDVETGDIIDLPLDAEAPGEPERFRRIPTRTPESEEEDRRLFVETLQGEFAPFRAPLAAAAENHNEYRQILSADRRVERSFFNFKNDRATRAIEEWAREQGLA |
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