NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10185387

Scaffold Ga0211736_10185387


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10185387 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25602
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002501Metagenome / Metatranscriptome553Y
F060898Metagenome / Metatranscriptome132N
F077287Metagenome / Metatranscriptome117N
F090403Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1018538718F002501AGGMWCGKCRGRVFVDRVFSQKLHVELFCIMCGKRWMCNKETSAFGRWLEKKETATLKNYGIS
Ga0211736_1018538719F077287AGGMGKAYGMKDVSALLNKHTVTLHDYILDGKIKAPQKIYPIGDPENKHWSKYMFCEKDILELHEFILDSGHSGNVPSRTELIGLLKHNIILYTKTDSGFIPVWKAE
Ga0211736_101853872F060898AGAAGMPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDSAPQGKTFDDIQRQALGIHASGDDVLSLQGTFAAQAGFGIGAGLGYTKE
Ga0211736_1018538720F090403GGAMEGGVMTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVVKSIKGDDDGE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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