Basic Information | |
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Taxon OID | 3300020151 Open in IMG/M |
Scaffold ID | Ga0211736_10185387 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25602 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (73.91%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 4 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002501 | Metagenome / Metatranscriptome | 553 | Y |
F060898 | Metagenome / Metatranscriptome | 132 | N |
F077287 | Metagenome / Metatranscriptome | 117 | N |
F090403 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211736_1018538718 | F002501 | AGG | MWCGKCRGRVFVDRVFSQKLHVELFCIMCGKRWMCNKETSAFGRWLEKKETATLKNYGIS |
Ga0211736_1018538719 | F077287 | AGG | MGKAYGMKDVSALLNKHTVTLHDYILDGKIKAPQKIYPIGDPENKHWSKYMFCEKDILELHEFILDSGHSGNVPSRTELIGLLKHNIILYTKTDSGFIPVWKAE |
Ga0211736_101853872 | F060898 | AGAAG | MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDSAPQGKTFDDIQRQALGIHASGDDVLSLQGTFAAQAGFGIGAGLGYTKE |
Ga0211736_1018538720 | F090403 | GGA | MEGGVMTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVVKSIKGDDDGE |
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