Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10206267 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10206267 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13634
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13634

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F018718	Metagenome / Metatranscriptome	233	Y
F027843	Metagenome	193	Y
F030760	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1020626712	F027843	N/A	MQIKFMNANGSMWVVKKEFKADSWFVQGLFSQKFTAQEACEWYCVEKLLRDSNNTHYLVNEVSEAQIIEDEVQS
Ga0211736_1020626717	F002303	N/A	MDIREQCRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLSMSRADTECRNNIFLLTMCKANCYLNGF
Ga0211736_1020626718	F005630	AGTAG	MINKSNKNKVMANLYEVEGFYGSRNRGTILVYETFSGKRWYCVEGSCNINCTYDEINEGCDVERISDIDTMSSRDGIYSARELCDFVIN
Ga0211736_1020626720	F007751	N/A	MNIITVIAPNTQSADLKSVIGKDVSQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0211736_1020626721	F018718	N/A	MKIREFYLENYPTDDLRLELNETPTFAGLLNQLIIGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK
Ga0211736_1020626724	F010084	N/A	MDITEEVIKHLKNNIKTKIGVSSIDGVGVFAIRDIKQYEEVFPIWNYDSGIYLIPNDRLGEIENEVVDLLDKYFINDECGYKVIRLFNGFNFLFHGFSYCNSAWPDKNKINITNNGIAMRDIKAGEEILEWYNENIN
Ga0211736_102062678	F030760	N/A	MVKQFTTKLPNMNYKTTHDIEIVSQSGDKITIKGLSYSTIMQIANSNPELKAITITKQYEKKISKY
Ga0211736_102062679	F010836	N/A	MATSNFHNVNASHIFACSLENEWDYEDLVDNLKSELSNDSDYVDYGKTDNNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYEGCNLDWNVDYLLNGDVSYDSPDFYIDDIAYCGNLTKSAATKYAKLAEKKAEKLRNEIVEKLEAIYNDYSMKLGVTAQFSNGETIYHKVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10206267

Overview

Ecosystem & Geography

Associated Families

Sequences