NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10774115

Scaffold Ga0211736_10774115


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10774115 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4137
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005701Metagenome / Metatranscriptome392Y
F010749Metagenome / Metatranscriptome299Y
F096603Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1077411511F010749GAGMKRFTFWRNAIISEVYVVECETEEQARTMLMNGEVDVFTEEWVDWATRDFELEHEEIIDPLYRMVKDYQSVDSLVD
Ga0211736_107741152F005701AGGAMFTQCIAYAKLVYNKKINAYKVQIAFNVHKELVGTNYKYKFPVQAKCNYVSGDLLAEDLQNEVQRTVAFAQQNLRTTQIVFVD
Ga0211736_107741157F096603GGAGMSLIDFLLGMALGGFIGFKVAEYIHVTMFRDILVKLKVKDSDMRGMIQDLQKDLTEDAMPRVEVKVELVNDQLYVYRLDTMEFLCQGANREAVLACLGERFHKGYHIVLSEEHGGKYLKESPTS
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