NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10917235

Scaffold Ga0211736_10917235


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10917235 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4243
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F033420Metagenome / Metatranscriptome177Y
F098687Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_109172351F098687N/AIENDSHYEFTCDNGKYIETCSYETFKEAVEDGKWGGWDEWAELFEESEEIDAE
Ga0211736_1091723511F033420AGGAMSDTPKSFLELDDAPVKVEPNKSVFTNVDSLQVREGSTAKQDDNGTWYNAIGLQSSASHRHVAKQWQDKCTPFSDFVETVKKQSEHKEDRVKKESQIRLSDANTLLDGTPLTKSGLNSLRMFTDIPSSMISFLQEREYDDELVKFVNQELDRRETTWNHSGKEPRDFRVRVRHDDEGNDVIRAIVS
Ga0211736_109172353F002406GAGMEDLKWISAMADRLRDTLSSEYDDETKDLIIRAFMNGLFKNPGLVEDLKSSSLIESDYFEDED
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