Basic Information | |
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Taxon OID | 3300020158 Open in IMG/M |
Scaffold ID | Ga0194038_1000116 Open in IMG/M |
Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34581 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (78.95%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 49.688 | Long. (o) | -93.689 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002539 | Metagenome | 550 | Y |
F012318 | Metagenome / Metatranscriptome | 281 | Y |
F017967 | Metagenome | 237 | Y |
F021910 | Metagenome | 216 | Y |
F028086 | Metagenome | 192 | Y |
F059611 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194038_100011626 | F012318 | AGGAG | MAYDSAFSPFGPTYQVGTAAIQVKASNNTYPTSYRIMNITSGIVRFAWAPQEPSDATVTPVATTPTTAGIPYVMSIPANGVAVFSGIPPNAWFISNTATSLEITPGEGKL |
Ga0194038_100011646 | F028086 | GGA | MTSEDIPFAGNVKVPSDDCEEAFFAVYPDFFYEGSTALNLWTQAWQAALDHIENKKPLIQLI |
Ga0194038_100011649 | F002539 | AGGAGG | MNHHIWTASGTDITLRWRKAGWIPPSEIQAYKDKWKYFQELPLRSLDAQGKIEYEGTLKLNKIFRIK |
Ga0194038_100011650 | F017967 | GGA | MAIKWYVKAPVSEYVAQDGTSKKRYATVGIVTETKKGDLMLKLEMIPLLGLKEGSFWAYLNVPEDKVDTPKSSNLADLESDIPF |
Ga0194038_100011656 | F021910 | N/A | MGRSNSFRYSFRRNVRFWSLIMGINRADAYYEPEDYDDRSDEIEERTWQLLKVGGKFDYRTSSAISEALSEMGADDSQALQDAIDTGDFAMLGRKIISMAMEYMESHAKEVAEFEIND |
Ga0194038_10001167 | F059611 | AGGA | MKDFSQPFLDAKRLLDEYYKAMIAQDKATAYQIANSFVETALKLEDIAHAD |
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