NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194038_1001352

Scaffold Ga0194038_1001352


Overview

Basic Information
Taxon OID3300020158 Open in IMG/M
Scaffold IDGa0194038_1001352 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10585
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007848Metagenome343Y
F011648Metagenome / Metatranscriptome288Y
F045569Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0194038_100135215F045569N/AMEIDPVKFGVTWQKVENMEYEVAELRKDVKQLLELANKGRGGLWAGMMVISAVSAFIGFISQYLTSK
Ga0194038_10013523F011648AGGAGMSEQEQDFQSFQQHLERIFKDLDDGVFLTADEIGDLRYACGLPSPVTKNPVLKAVFDDFSNIFRSKQ
Ga0194038_10013527F007848N/AMPVYKCLVKEKIMKDFIGSCLLGALLGCMFAYGSAKAQSYPITNAQGYNVGTVQIQGNTAQFVNPMGYTTQTATIYPNQVIITTPSGYTQSVIGNTGYTTPPSPPTPMSPRVMQ
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