NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194038_1005120

Scaffold Ga0194038_1005120


Overview

Basic Information
Taxon OID3300020158 Open in IMG/M
Scaffold IDGa0194038_1005120 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5147
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F017287Metagenome241Y
F027764Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0194038_100512011F007166GGAMSQLNQLMIEMEERLEIALDNMEFGTELAQDDIDVIRAACGKPNNKRNVLLQNVFEDFGGIFGNPLESFPTIRGAK
Ga0194038_10051202F027764AGGMDIRIEIVKEHEDGSADALVHFDKEGLGILVEEGILSILRKYIKQEKNDSKRKKRKSND
Ga0194038_10051206F017287AGGMDTYIRRVFEAEAPCDKCTQKTDCQEFELACRAFSYYVLHGTFHAHTARMPTHNLFNKIFKEDDKALKTYMKSLAAKEGGICG

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