NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194038_1006882

Scaffold Ga0194038_1006882


Overview

Basic Information
Taxon OID3300020158 Open in IMG/M
Scaffold IDGa0194038_1006882 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4328
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011282Metagenome292Y
F031035Metagenome183Y
F062385Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0194038_100688212F031035GAGMSKELIQLRIQDLMAKGRELEQQIHQINGALQQCQWMLAEMEKNDVKEVDQPQGV
Ga0194038_10068822F011282AGGAGMKKIKNITVVTGVYTNKDGQEKKRYMTIGSLFEDNGNLKIKFDAMPLAEGGWNGWANCYDLEEKTNPKAKFDDAPF
Ga0194038_10068829F062385AGGAMGYYGKEVAPKGVKSSDRTGEKMITASKVDKEGMGVPSTTGATPPKGALSSDTSGERKAPIRGGVGMGKADGLGMREASHMGHHDGRMGEMKGHMGEKVVYEHRRMAHEQDGM
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