NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10156367

Scaffold Ga0211734_10156367


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10156367 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3808
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012775Metagenome277Y
F024554Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_101563675F012775GGAGVKLFSEITRPLIALNLKVRLKRWPEAYYIYRDEEKLMDSMGNLFYYSWEEFIRQNQHILNNAGPVWEIYEEVEFDNL
Ga0211734_101563676F024554GGAGGMKKAIVLFILFFGLSASIYAQKPPAVKNFTAIVEQCFCTGNNSKFHVVMKWDLIPKCIRYRIIRDGKQLTLLTNNENIHIDRAVLNSKSYTYQVGGLVPSGNLQLSLPVKVTIPKFATKNPEAPTNLRTFGFWDNGAFDVLQWEPSPEATYYNIYRYDNKIGSSKTNSFTVSKLIYQDHWTYTVTAVDKYGLESLPSNLGMARGEYAPNYNFGWRSNPPSTPGKYAVNPEWNRGRPRNFIKWQDQQVWGQDAPGAYNVYRDGVKVCSGLWSQYYIDTNVVSGKTYKYQIGSVNRDQFKVQETLGPVVEITTAFGPKDLSTTPIKINGNEPNDDSVVVKFDYVPGALDYRVYVEGNPNTVKYSSGFNM
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