NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10467657

Scaffold Ga0211734_10467657


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10467657 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8518
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008183Metagenome / Metatranscriptome337Y
F050321Metagenome / Metatranscriptome145Y
F058801Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1046765711F058801N/AKHSNFETPRNFADCTWVQGYGREEPLWERVAGYVLAFGIGAGLAVLLVAWWS
Ga0211734_104676575F008183GAGGMAFENVDIDPVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMTVVSGASAVVGYFLSYWKH
Ga0211734_104676576F050321GAGMITLNKWYPMVQPTNTATQLAFDKAVEKVQEEYRYAMECLKQVRKTEDLELELYDKRARQNTIELGSFEDRRRFQIFV
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