NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10504280

Scaffold Ga0211734_10504280


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10504280 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2442
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F074873Metagenome / Metatranscriptome119Y
F078699Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_105042803F002398GAGGMLPFISIFLLLSLDPIKNFVSLKTYISENAKVHCYVYFINEDIPDFPRVNLIEKSKIEFFEYLDSIGIEHSKVGSYYFFNRKTK
Ga0211734_105042804F002406N/AMEDLKWIRAMSERLRDTLTNEYDDETKDLIIRAFAAGLFKNNTVLEELKSSSLIESDYFEDEE
Ga0211734_105042807F078699GAGGMKLGFKLVGTLEVPDDVILHEDVLNQLYALEMNDKMYMLQMCLVAETSQGEYEMVHQFEEMEEHNFKNVRYSDAEFFELDES
Ga0211734_105042808F074873N/APEYFVRELSKLYPDATFEMVSGSIENDTHYEFTCDNGKFEETCSYETFKEAVVDGKWGGWNEWAEMFQEDE
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