NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211734_10721501

Scaffold Ga0211734_10721501


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10721501 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113680
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (14.84%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010082Metagenome308Y
F028540Metagenome / Metatranscriptome191Y
F036664Metagenome169Y
F065704Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1072150115F010082N/AMLSPRLVNCVDCTTAPKLINDIDCRLTILANNQYNNIVFMLNFPYPGDIIGDLLNYKRILVNKVCNPDYASAYTIDMIASRVKVLIHK
Ga0211734_1072150126F028540N/AMNPVFEAWVVIEKLGALCATPGISEDVQKEANEQIKRLLEDVVSPSLTKLSASSAGIITK
Ga0211734_1072150160F065704N/AMGASWFRTQSTGKDIKDAYNKAVERADDEYGHQEGYSGQINCSSGFRDVTKEFKASKKSMSQFMDEAADKLSKHQGAQAICIEEPKGNDNKVKSQVEHVVTPGTKKWVLTYIVYCGSDRIASALTKGDAVKRARDYSEKHQCTTWIKMERRLEKDAHALVAKVTYKKSSTEKEGKWIFFGWASY
Ga0211734_1072150168F036664N/AMTFDELKESIQEEIEWLETTDRDVIQCISIENLEAILSVYFNTEIKLTKEEN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.