Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10846210 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_10846210 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6453
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (26.32%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6453

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (26.32%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F007169	Metagenome / Metatranscriptome	356	N
F009682	Metagenome / Metatranscriptome	314	Y
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y
F102699	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1084621011	F024782	N/A	MIEKAIERLRAYNDWRTGKDDRTMDEADIKPRQVTEDIENICNELEKLIKMYASGN
Ga0211734_1084621012	F102699	GGA	MHEPSFYLSLDLPKNFTREDAEKIRKDVLDFLEGKRHYGAKYDGKNGITVKVISVSTNHD
Ga0211734_1084621014	F022862	N/A	MKFTPHQYELICKTRDEIRSLNDKQHTLYNNLLKELNISIYAEDWMFDYIYNEAGTIDDIEARM
Ga0211734_1084621016	F007169	N/A	MSYQLEFNFETPEQKEKRLKDWQKQESEIDKMFERDGDYYTYNKYVDKLLDLLPYRLGWGFKNNWSELRWWIKCKYQTFRYGVSDDDVYSLESRIAEYIVPRLQYFKKKGKFGIPMKFLPSNYIYLEGEEKDKAEKIGEKEIDRILNEMIFAFDYIINPDKYVPFPESSAKWDLKDRNYFNREKTIEEKAAWDDYIKKCEQCNTRKKQGLQLFAEHMDILWI
Ga0211734_108462106	F001840	N/A	MKEEQDSVFLICDCFSHGLLVEKFKGEEEVSLSLFERGLNGRILSWSSRLRWCWQILRYGKPWSDFVILNTENQKRLKDFLVNE
Ga0211734_108462108	F009682	N/A	MKKDLYMKKPNENIVIQSDDLKFDGKNIIIPSYYAGIVSEYLANVDLKALNFNDADTHDYLAFCSFFEAILDYKDKGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_10846210

Overview

Ecosystem & Geography

Associated Families

Sequences